plot.biomass.contributions: Plot the contributions to biomass from each region Original...

In PacificCommunity/ofp-sam-diags4MFCL: R Functions for Presenting MULTIFAN-CL Results and Diagnostics

Plot the contributions to biomass from each region Original code from Rob Scott's FLR4MFCL package and refreshed for diags4mfcl

Description

Plot the contributions to biomass from each region Original code from Rob Scott's FLR4MFCL package and refreshed for diags4mfcl

Usage

plot.biomass.contributions(
  par,
  rep,
  Fmult = 0,
  proportion = TRUE,
  cols = NULL,
  save.dir,
  save.name
)

Arguments

par	MFCLPar object
rep	MFCLRep object
Fmult	A multiplier on the terminal year fishing mortality
proportion	TRUE or FALSE. Plot raw biomass (shows scale between region) or plot proportion of biomass by source region
cols	A vector of colors for each region. If NULL then the default will be a vibrant rainbow.
save.dir	Path to the directory where the outputs will be saved
save.name	Name stem for the output, useful when saving many model outputs in the same directory

PacificCommunity/ofp-sam-diags4MFCL documentation built on Oct. 11, 2023, 1:32 a.m.