plot.movement.matrix: Plot the movement esimated movement for a single MFCLPar or...

In PacificCommunity/ofp-sam-diags4MFCL: R Functions for Presenting MULTIFAN-CL Results and Diagnostics

Plot the movement esimated movement for a single MFCLPar or the difference in the estimated movements for two pars with the same spatial, seasonal, age structure.

Description

Plot the movement esimated movement for a single MFCLPar or the difference in the estimated movements for two pars with the same spatial, seasonal, age structure.

Usage

plot.movement.matrix(
  pars,
  par.names = NULL,
  age.vec = NULL,
  season.vec = NULL,
  save.dir,
  save.name
)

Arguments

pars	a list of two MFCLPar objects or a single MFCLPar object. The reference model should be the first in the list.
par.names	an optional vector of character strings naming the models for plotting purposes. If not supplied, model names will be taken from the names in the par.list (if available) or generated automatically.
age.vec	An integer value or vector denoting the age class or classes to plot the movement for. If missing, the average movement across all ages is plotted.
season.vec	An integer value or vector of integers denoting which seasons to plot the movement for. If missing then the average movement across seasons is plotted.
save.dir	Path to the directory where the outputs will be saved
save.name	Name stem for the output, useful when saving many model outputs in the same directory

PacificCommunity/ofp-sam-diags4MFCL documentation built on Oct. 11, 2023, 1:32 a.m.