plot.maturity: Plot maturity for each model give choice of by length or age

In PacificCommunity/ofp-sam-diags4MFCL: R Functions for Presenting MULTIFAN-CL Results and Diagnostics

Plot maturity for each model give choice of by length or age

Description

Plots the natural mortality by length bin or age class for each mode

Usage

plot.maturity(
  pars,
  par.names = NULL,
  Length = FALSE,
  LnBins,
  show.legend = TRUE,
  palette.func = default.model.colours,
  xlab = "Age class",
  ylab = "Reproductive output",
  LegLoc = "bottomright",
  linesize = 1,
  save.dir,
  save.name,
  ...
)

Arguments

pars	a list of MFCLPar objects or a single MFCLPar object. The reference model should be the first in the list.
par.names	an optional vector of character strings naming the models for plotting purposes. If not supplied, model names will be taken from the names in the par.list (if available) or generated automatically.
Length	a boolean to determine whether to plot maturity at age (default) or maturity at length
LnBins	a vector of length bin values
show.legend	Do you want to show the plot legend, TRUE (default) or FALSE.
palette.func	A function to determine the colours of the models. The default palette has the reference model in black. It is possible to determine your own palette function. Two functions currently exist: default.model.colours() and colourblind.model.colours().
xlab	Name to display on the x axis label
ylab	Name to display on the y axis label
LegLoc	legend location if show.legen is TRUE
linesize	Size of line.
save.dir	Path to the directory where the outputs will be saved
save.name	Name stem for the output, useful when saving many model outputs in the same directory
...	Passes extra arguments to the palette function. Use the argument all.model.colours to ensure consistency of model colours when plotting a subset of models.

PacificCommunity/ofp-sam-diags4MFCL documentation built on Oct. 11, 2023, 1:32 a.m.