plot.overall.composition.fit: Plot composite catch-at-length data for each fishery.

In PacificCommunity/ofp-sam-diags4MFCL: R Functions for Presenting MULTIFAN-CL Results and Diagnostics

Plot composite catch-at-length data for each fishery.

Description

Plot composite (all time periods combined) observed and predicted catch-at-length for each fishery. The table comes from the length.fit file and has already been processed using the length.fit.preparation() function (which is based on Yukio's code). This may also work with weight.fit data but has not been tested yet.

Usage

plot.overall.composition.fit(
  lfit,
  fisheries,
  fishery_names,
  save.dir,
  save.name,
  ncol = NULL,
  xlab = "Length (cm)"
)

Arguments

lfit	A data.frame of observed and predicted composite catch-at-length data (generated using length.fit.preparation()).
fisheries	The numbers of the fisheries to plot.
fishery_names	The names of the fisheries to plot.
save.dir	Path to the directory where the outputs will be saved
save.name	Name stem for the output, useful when saving many model outputs in the same directory
ncol	Number of columns to plot across. Default is ggplot2 default.
xlab	Label for the xaxis.

PacificCommunity/ofp-sam-diags4MFCL documentation built on Oct. 11, 2023, 1:32 a.m.