plotMosdepth_t: Plot results from mosdepth output
In PoisonAlien/maftools: Summarize, Analyze and Visualize MAF Files

plotMosdepth_t

R Documentation

Plot results from mosdepth output

Description

Plot results from mosdepth output

Usage

plotMosdepth_t(
  bed = NULL,
  col = c("#95a5a6", "#7f8c8d"),
  sample_name = NULL,
  segment = FALSE
)

Arguments

`bed`	mosdepth output
`col`	Colors. Default c("#95a5a6", "#7f8c8d")
`sample_name`	sample name. Default parses from 'bed'
`segment`	Performs CBS segmentation. Default FALSE

Value

Invisibly returns DNAcopy object if 'segment' is 'TRUE'

References

Pedersen BS, Quinlan AR. Mosdepth: quick coverage calculation for genomes and exomes. Bioinformatics. 2018;34(5):867-868. doi:10.1093/bioinformatics/btx699

PoisonAlien/maftools documentation built on Nov. 10, 2024, 6:01 p.m.