segmentLogR: Segment and plot log ratio values with DNACopy
In PoisonAlien/maftools: Summarize, Analyze and Visualize MAF Files
segmentLogR R Documentation
Segment and plot log ratio values with DNACopy
Description
The function takes logR file generated by prepAscat or prepAscat_t and performs segmentation with DNAcopy
Usage
segmentLogR(tumor_logR = NULL, sample_name = NULL, build = "hg19")
Arguments
tumor_logR
logR.txt file generated by prepAscat or prepAscat_t
sample_name
Default NULL. Parses from 'tumor_logR' file
build
Reference genome. Default hg19. Can be hg18, hg19, or hg38
Value
Invisibly returns DNAcopy object
See Also
gtMarkers prepAscat
PoisonAlien/maftools documentation built on April 7, 2024, 2:49 a.m.
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| segmentLogR | R Documentation |
Segment and plot log ratio values with DNACopy
Description
The function takes logR file generated by prepAscat or prepAscat_t and performs segmentation with DNAcopy
Usage
segmentLogR(tumor_logR = NULL, sample_name = NULL, build = "hg19")
Arguments
tumor_logR |
logR.txt file generated by |
sample_name |
Default NULL. Parses from 'tumor_logR' file |
build |
Reference genome. Default hg19. Can be hg18, hg19, or hg38 |
Value
Invisibly returns DNAcopy object
See Also
gtMarkers prepAscat
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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