tcgaDriverBP: Compare genes to known TCGA drivers and their biological...

In PoisonAlien/maftools: Summarize, Analyze and Visualize MAF Files

Compare genes to known TCGA drivers and their biological pathways

Description

A small function which uses known cancer driver genes and their associatd pathways from TCGA cohorts. See reference for details

Usage

tcgaDriverBP(m, genes = NULL, top = 20, fontSize = 0.7)

Arguments

m	an MAF object
genes	genes to compare. Default 'NULL'.
top	Top number of genes to use. Mutually exclusive with 'genes' argument. Default 20
fontSize	Default 0.7

References

Bailey MH, Tokheim C, Porta-Pardo E, et al. Comprehensive Characterization of Cancer Driver Genes and Mutations . Cell. 2018;173(2):371–385.e18. doi:10.1016/j.cell.2018.02.060

PoisonAlien/maftools documentation built on Nov. 10, 2024, 6:01 p.m.