SprockettTHData: SprockettTHData
In RIVM-IIV-Microbiome/biomeUtils: Utilities for microbiome analytics
SprockettTHData R Documentation
SprockettTHData
Description
SprockettTHData
Usage
data(SprockettTHData)
Format
Phyloseq object
Details
The SprockettTHData dataset contains 16S rRNA gene based high-throughput
profiling of 1966 Feces, 120 Saliva samples from 319 participants from
Bolivia, Finland and Bangladesh. These include samples from adults,
children, and infants. Several participants have longitudinal samples.
The data consists of 2319 taxa from 2086 samples. The data
set can be used to investigate assembly, structure, and dynamics as well
as associations between several host related parameters with microbiota.
The data is also made available in microbiomeDataSets pkg.
Value
Loads the data set in R.
Author(s)
Sudarshan Shetty sudarshanshetty9@gmail.com
References
Sprockett, D.D., Martin, M., Costello, E.K. et al. (2020) Microbiota assembly,
structure, and dynamics among Tsimane horticulturalists of the Bolivian
Amazon.
Nat Commun 11, 3772 https://doi.org/10.1038/s41467-020-17541-6
Subramanian, S., Huq, S., Yatsunenko, T., et al. (2014) Persistent gut microbiota
immaturity in malnourished Bangladeshi children.
Nature 510, 417-421 https://doi.org/10.1038/nature13421
Vatanen, T., Kostic A.D., d'Hennezel E., et al. (2016) Variation in microbiome LPS
immunogenicity contributes to autoimmunity in humans.
Cell 165, 842-853 https://doi.org/10.1016/j.cell.2016.04.007
RIVM-IIV-Microbiome/biomeUtils documentation built on July 20, 2023, 10:29 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| SprockettTHData | R Documentation |
SprockettTHData
Description
SprockettTHData
Usage
data(SprockettTHData)
Format
Phyloseq object
Details
The SprockettTHData dataset contains 16S rRNA gene based high-throughput profiling of 1966 Feces, 120 Saliva samples from 319 participants from Bolivia, Finland and Bangladesh. These include samples from adults, children, and infants. Several participants have longitudinal samples. The data consists of 2319 taxa from 2086 samples. The data set can be used to investigate assembly, structure, and dynamics as well as associations between several host related parameters with microbiota. The data is also made available in microbiomeDataSets pkg.
Value
Loads the data set in R.
Author(s)
Sudarshan Shetty sudarshanshetty9@gmail.com
References
Sprockett, D.D., Martin, M., Costello, E.K. et al. (2020) Microbiota assembly, structure, and dynamics among Tsimane horticulturalists of the Bolivian Amazon. Nat Commun 11, 3772 https://doi.org/10.1038/s41467-020-17541-6
Subramanian, S., Huq, S., Yatsunenko, T., et al. (2014) Persistent gut microbiota immaturity in malnourished Bangladeshi children. Nature 510, 417-421 https://doi.org/10.1038/nature13421
Vatanen, T., Kostic A.D., d'Hennezel E., et al. (2016) Variation in microbiome LPS immunogenicity contributes to autoimmunity in humans. Cell 165, 842-853 https://doi.org/10.1016/j.cell.2016.04.007
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.