getTaxaOverview: Get Overview of Taxa Abundances

In RIVM-IIV-Microbiome/biomeUtils: Utilities for microbiome analytics

Get Overview of Taxa Abundances

Description

Get Overview of Taxa Abundances

Usage

getTaxaOverview(x, rank = NULL)

Arguments

x	A phyloseq object
rank	Default is NULL and returns overview matching taxa_names. Else user can provide one of the ranks available in 'rank_names' of phyloseq object.

Value

A tibble

Author(s)

Sudarshan A. Shetty

References

Shetty SA (2020). Utilities for microbiome analytics. https://github.com/RIVM-IIV-Microbiome/biomeUtils

See Also

getTaxaSummary

Examples

library(biomeUtils)
data("FuentesIliGutData")
getProportions(FuentesIliGutData) |>
   filterSampleData(ILI == "C") |>
   getTaxaOverview(rank="Phylum")

RIVM-IIV-Microbiome/biomeUtils documentation built on July 20, 2023, 10:29 a.m.