summarizeTaxonomicAssignments: Summarize Taxonomic Assignments
In RIVM-IIV-Microbiome/biomeUtils: Utilities for microbiome analytics
View source: R/summarizeTaxonomicAssignments.R
summarizeTaxonomicAssignments R Documentation
Summarize Taxonomic Assignments
Description
Summarize Taxonomic Assignments
Usage
summarizeTaxonomicAssignments(x)
Arguments
x
A phyloseq object
Details
Percentage of taxa that have been assigned to the different
taxonomic levels. Non assigned levels must be NA. Check
biomeUtils::cleanTaxonomy.
Value
tibble with overview of taxonomic assignments.
Author(s)
Sudarshan A. Shetty
Examples
library(biomeUtils)
data("SprockettTHData")
# run cleanTaxonomy if special characters are
# present in tax_table
summarizeTaxonomicAssignments(SprockettTHData)
RIVM-IIV-Microbiome/biomeUtils documentation built on July 20, 2023, 10:29 a.m.
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View source: R/summarizeTaxonomicAssignments.R
| summarizeTaxonomicAssignments | R Documentation |
Summarize Taxonomic Assignments
Description
Summarize Taxonomic Assignments
Usage
summarizeTaxonomicAssignments(x)
Arguments
x |
A phyloseq object |
Details
Percentage of taxa that have been assigned to the different taxonomic levels. Non assigned levels must be NA. Check biomeUtils::cleanTaxonomy.
Value
tibble with overview of taxonomic assignments.
Author(s)
Sudarshan A. Shetty
Examples
library(biomeUtils)
data("SprockettTHData")
# run cleanTaxonomy if special characters are
# present in tax_table
summarizeTaxonomicAssignments(SprockettTHData)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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