transformation: Common Transformations
In RIVM-IIV-Microbiome/biomeUtils: Utilities for microbiome analytics
transformation R Documentation
Common Transformations
Description
Common Transformations
Usage
getProportions(x)
getCLR(x)
Arguments
x
phyloseq object
Details
Common transformation in microbiome like proportions, clr.
getProportions convert counts to relative abundance.
getCLR convert counts to centred log transform 'clr'
Value
Transformed phyloseq
Author(s)
Sudarshan A. Shetty
References
Shetty SA (2020). Utilities for microbiome analytics.
https://github.com/RIVM-IIV-Microbiome/biomeUtils
Examples
library(biomeUtils)
data("FuentesIliGutData")
ps.rel <- getProportions(FuentesIliGutData)
ps.clr <- getCLR(FuentesIliGutData)
RIVM-IIV-Microbiome/biomeUtils documentation built on July 20, 2023, 10:29 a.m.
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| transformation | R Documentation |
Common Transformations
Description
Common Transformations
Usage
getProportions(x)
getCLR(x)
Arguments
x |
|
Details
Common transformation in microbiome like proportions, clr.
getProportions convert counts to relative abundance.
getCLR convert counts to centred log transform 'clr'
Value
Transformed phyloseq
Author(s)
Sudarshan A. Shetty
References
Shetty SA (2020). Utilities for microbiome analytics. https://github.com/RIVM-IIV-Microbiome/biomeUtils
Examples
library(biomeUtils)
data("FuentesIliGutData")
ps.rel <- getProportions(FuentesIliGutData)
ps.clr <- getCLR(FuentesIliGutData)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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