uniteGenusSpeciesNames: Unite Genus Species Names
In RIVM-IIV-Microbiome/biomeUtils: Utilities for microbiome analytics
View source: R/uniteGenusSpeciesNames.R
uniteGenusSpeciesNames R Documentation
Unite Genus Species Names
Description
Unite Genus Species Names
Usage
uniteGenusSpeciesNames(x)
Arguments
x
A phyloseq object
Details
Unite genus and species names in tax_table phyloseq
objects. E.g. Fusicatenibacter and saccharivorans are united
to Fusicatenibacter.saccharivorans.
Value
A phyloseq with united genus and species
in taxa_table .
Author(s)
Sudarshan A. Shetty
References
Shetty SA (2021). Utilities for microbiome analytics.
https://github.com/RIVM-IIV-Microbiome/biomeUtils
Examples
library(biomeUtils)
data("FuentesIliGutData")
ps <- uniteGenusSpeciesNames(FuentesIliGutData)
head(tax_table(ps)[, 7])
RIVM-IIV-Microbiome/biomeUtils documentation built on July 20, 2023, 10:29 a.m.
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View source: R/uniteGenusSpeciesNames.R
| uniteGenusSpeciesNames | R Documentation |
Unite Genus Species Names
Description
Unite Genus Species Names
Usage
uniteGenusSpeciesNames(x)
Arguments
x |
A phyloseq object |
Details
Unite genus and species names in tax_table phyloseq
objects. E.g. Fusicatenibacter and saccharivorans are united
to Fusicatenibacter.saccharivorans.
Value
A phyloseq with united genus and species
in taxa_table .
Author(s)
Sudarshan A. Shetty
References
Shetty SA (2021). Utilities for microbiome analytics. https://github.com/RIVM-IIV-Microbiome/biomeUtils
Examples
library(biomeUtils)
data("FuentesIliGutData")
ps <- uniteGenusSpeciesNames(FuentesIliGutData)
head(tax_table(ps)[, 7])
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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