checkPolyphyletic: Check for Polyphyletic Taxa
In RIVM-IIV-Microbiome/biomeUtils: Utilities for microbiome analytics
View source: R/checkPolyphyletic.R
checkPolyphyletic R Documentation
Check for Polyphyletic Taxa
Description
Check for Polyphyletic Taxa
Arguments
x
phyloseq object
taxa_level
Taxonomic level to check. Default is Genus
return_df
Logical. Return data.frame or list
Details
Check for polyphyletic taxa in tax_table. Useful to check this
before aggregating at any level.
Value
Data frame or list
Author(s)
Sudarshan A. Shetty
References
Shetty SA (2020). Utilities for microbiome analytics.
https://github.com/RIVM-IIV-Microbiome/biomeUtils
Examples
library(biomeUtils)
library(dplyr)
data("FuentesIliGutData")
polydf <- checkPolyphyletic(FuentesIliGutData)
polydf
RIVM-IIV-Microbiome/biomeUtils documentation built on July 20, 2023, 10:29 a.m.
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View source: R/checkPolyphyletic.R
| checkPolyphyletic | R Documentation |
Check for Polyphyletic Taxa
Description
Check for Polyphyletic Taxa
Arguments
x |
|
taxa_level |
Taxonomic level to check. Default is Genus |
return_df |
Logical. Return data.frame or list |
Details
Check for polyphyletic taxa in tax_table. Useful to check this
before aggregating at any level.
Value
Data frame or list
Author(s)
Sudarshan A. Shetty
References
Shetty SA (2020). Utilities for microbiome analytics. https://github.com/RIVM-IIV-Microbiome/biomeUtils
Examples
library(biomeUtils)
library(dplyr)
data("FuentesIliGutData")
polydf <- checkPolyphyletic(FuentesIliGutData)
polydf
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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