collapseTranscripts: Collapse transcripts, discarding any with low reads...
In RamsinghLab/arkas_staging: A package that complements Kallisto for quick, informative *seq analysis
Description
Usage
Arguments
Value
See Also
View source: R/collapseTranscripts.R
Description
Collapse transcripts, discarding any with low reads (pointless to test them)
Filtering usually increases statistical power for given false-positive rate.
per Bourgon et al, 2010, http://www.pnas.org/content/107/21/9546.long
Usage
1
collapseTranscripts(kexp, read.cutoff = 1, ...)
Arguments
kexp
A KallistoExperiment (or something very much like it)
read.cutoff
Discard transcripts and/or bundles w/ < this many reads
...
any more parameters to add
Value
a matrix of filtered transcript counts
See Also
collapseBundles
RamsinghLab/arkas_staging documentation built on March 14, 2021, 11:40 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value See Also
View source: R/collapseTranscripts.R
Description
Collapse transcripts, discarding any with low reads (pointless to test them) Filtering usually increases statistical power for given false-positive rate. per Bourgon et al, 2010, http://www.pnas.org/content/107/21/9546.long
Usage
1 | collapseTranscripts(kexp, read.cutoff = 1, ...)
|
Arguments
kexp |
A KallistoExperiment (or something very much like it) |
read.cutoff |
Discard transcripts and/or bundles w/ < this many reads |
... |
any more parameters to add |
Value
a matrix of filtered transcript counts
See Also
collapseBundles
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.