parseFastqNames: like it says: parse the chunks of FASTQ file names to get...

In RamsinghLab/arkas_staging: A package that complements Kallisto for quick, informative *seq analysis

Description

like it says: parse the chunks of FASTQ file names to get lanes, fwd/rev, &c

Usage

parseFastqNames(allFiles, extension = "\\.fastq\\.gz", readPrefix = "R",
  lanePrefix = "L", splitChar = "_", ...)

Arguments

allFiles	all the FASTQ filenames for a sample
extension	the file extension, default is ".fastq.gz"
readPrefix	the read indicator prefix, default is "R" per Illumina
lanePrefix	the lane indicator prefix, default is "L" per Illumina
splitChar	the character that is used to separate bits of information
...	any additional user input parameters

Value

a data.frame with the sample stubs, read directions & filenames

RamsinghLab/arkas_staging documentation built on March 14, 2021, 11:40 a.m.