fitTranscripts: encapsulate limma/voom analysis and TMM normalization at...
In RamsinghLab/arkas_staging: A package that complements Kallisto for quick, informative *seq analysis
Description
Usage
Arguments
Value
View source: R/fitTranscripts.R
Description
encapsulate limma/voom analysis and TMM normalization at transcript level
FIXME: just farm it out to sleuth, e.g. as seen in ?artemisData::withSleuth
Usage
1
fitTranscripts(kexp, design, read.cutoff = 1, ...)
Arguments
kexp
A KallistoExperiment
design
A model matrix
read.cutoff
Exclude transcripts where the maximum count is < this
...
any additional parameters
Value
A list with elements (design, voomed, fit)
RamsinghLab/arkas_staging documentation built on March 14, 2021, 11:40 a.m.
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Description Usage Arguments Value
View source: R/fitTranscripts.R
Description
encapsulate limma/voom analysis and TMM normalization at transcript level FIXME: just farm it out to sleuth, e.g. as seen in ?artemisData::withSleuth
Usage
1 | fitTranscripts(kexp, design, read.cutoff = 1, ...)
|
Arguments
kexp |
A KallistoExperiment |
design |
A model matrix |
read.cutoff |
Exclude transcripts where the maximum count is < this |
... |
any additional parameters |
Value
A list with elements (design, voomed, fit)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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