dumpToBigWig: Dump the columns of a kexp to bigWig files. This requires...
In RamsinghLab/arkas_staging: A package that complements Kallisto for quick, informative *seq analysis
Description
Usage
Arguments
Details
Value
Description
Dump the columns of a kexp to bigWig files. This requires additional
machinery beyond the default TxDbLite indexing and as such is not yet
exported. We are hopeful that this along with QC metrics can be exported
in a forthcoming release.
Usage
1
dumpToBigWig(kexp, annotations)
Arguments
kexp
A KallistoExperiment (or something very much like it)
annotations
Shared-exon annotations and coordinates for transcripts
Details
This function sums transcripts per million (TPM) of each transcript
within bundles of transcripts and then writes out a wiggle track of TPM over
exons using the information in the annotations argument.
Value
a list of bigWig filenames produced
RamsinghLab/arkas_staging documentation built on March 14, 2021, 11:40 a.m.
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Description Usage Arguments Details Value
Description
Dump the columns of a kexp to bigWig files. This requires additional machinery beyond the default TxDbLite indexing and as such is not yet exported. We are hopeful that this along with QC metrics can be exported in a forthcoming release.
Usage
1 | dumpToBigWig(kexp, annotations)
|
Arguments
kexp |
A KallistoExperiment (or something very much like it) |
annotations |
Shared-exon annotations and coordinates for transcripts |
Details
This function sums transcripts per million (TPM) of each transcript within bundles of transcripts and then writes out a wiggle track of TPM over exons using the information in the annotations argument.
Value
a list of bigWig filenames produced
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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