annotateFeatures: annotate rowRanges genes or transcripts against (say)...

In RamsinghLab/arkas_staging: A package that complements Kallisto for quick, informative *seq analysis

Description

annotate rowRanges genes or transcripts against (say) EnsemblDb this is becoming the default dispatcher for almost all annotation

Usage

annotateFeatures(kexp, level = c(NA, "gene", "transcript"),
  what = c("KallistoExperiment", "GRanges"), verbose = FALSE, ...)

Arguments

kexp	a kexp
level	at what level has the data been summarized? (guess)
what	what data structure to return? (KallistoExperiment)
verbose	boolean, whether to print messages to screen default is silent
...	any more

Value

a GRanges or a KallistoExperiment, depending on 'what'

RamsinghLab/arkas_staging documentation built on March 14, 2021, 11:40 a.m.