collapseByTss: groundwork for collapsing rows of a...
In RamsinghLab/arkas_staging: A package that complements Kallisto for quick, informative *seq analysis
Description
Usage
Arguments
Value
View source: R/collapseByTss.R
Description
groundwork for collapsing rows of a RangedSummarizedExperiment assay by TSS
Usage
1
collapseByTss(kexp, groups = c("auto", "sex", "circular"), slop = 200)
Arguments
kexp
the RSE, in this case a KallistoExperiment
groups
groups of chromosomes to keep (default: auto+sex+circular)
slop
how wide a range to reduce TSSes over for grouping (200bp)
Value
the TSS for transcripts on chr1:22/X/Y/M to collapse by TSS,
or NA for transcripts originating anywhere else (ERCC, repeats, &c)
RamsinghLab/arkas_staging documentation built on March 14, 2021, 11:40 a.m.
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Description Usage Arguments Value
View source: R/collapseByTss.R
Description
groundwork for collapsing rows of a RangedSummarizedExperiment assay by TSS
Usage
1 | collapseByTss(kexp, groups = c("auto", "sex", "circular"), slop = 200)
|
Arguments
kexp |
the RSE, in this case a KallistoExperiment |
groups |
groups of chromosomes to keep (default: auto+sex+circular) |
slop |
how wide a range to reduce TSSes over for grouping (200bp) |
Value
the TSS for transcripts on chr1:22/X/Y/M to collapse by TSS, or NA for transcripts originating anywhere else (ERCC, repeats, &c)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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