fetchKallisto: fetch one sample's worth of Kallisto estimates, perhaps with...
In RamsinghLab/arkas_staging: A package that complements Kallisto for quick, informative *seq analysis
View source: R/fetchKallisto.R
Description
fetch one sample's worth of Kallisto estimates, perhaps with bootstraps
Usage
1
2
fetchKallisto(sampleDir = ".", h5file = "abundance.h5",
collapse = "_mergedWith_", transcriptomes = NULL, summarize = FALSE)
Arguments
sampleDir
character string: the path to h5/json files
h5file
character string: the file to read
collapse
string: collapsing string for indices ("_mergedWith_")
transcriptomes
string: if this is not NULL, many checks are skipped.
summarize
boolean: summarize bootstraps if found? (FALSE)
RamsinghLab/arkas_staging documentation built on March 14, 2021, 11:40 a.m.
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View source: R/fetchKallisto.R
Description
fetch one sample's worth of Kallisto estimates, perhaps with bootstraps
Usage
1 2 | fetchKallisto(sampleDir = ".", h5file = "abundance.h5",
collapse = "_mergedWith_", transcriptomes = NULL, summarize = FALSE)
|
Arguments
sampleDir |
character string: the path to h5/json files |
h5file |
character string: the file to read |
collapse |
string: collapsing string for indices ("_mergedWith_") |
transcriptomes |
string: if this is not NULL, many checks are skipped. |
summarize |
boolean: summarize bootstraps if found? (FALSE) |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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