indexKallisto: index transcriptome/transcriptomes
In RamsinghLab/arkas_staging: A package that complements Kallisto for quick, informative *seq analysis
View source: R/indexKallisto.R
Description
index transcriptome/transcriptomes
Usage
1
2
indexKallisto(fastaFiles, fastaPath, fastaTxDbLite = TRUE,
collapse = "_mergedWith_", kmer = 31, makeUnique = TRUE)
Arguments
fastaFiles
a character string or vector of FASTA transcriptomes
fastaPath
where to find the preceding FASTA files
fastaTxDbLite
boolean: should we try to annotate new FASTAs? (yes)
collapse
string to name multi-FASTA indices ("_mergedWith_")
kmer
integer, integer 3-31 of kmer size,default 31
makeUnique
boolean, true will auto-correct existing dupes flexible
RamsinghLab/arkas_staging documentation built on March 14, 2021, 11:40 a.m.
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View source: R/indexKallisto.R
Description
index transcriptome/transcriptomes
Usage
1 2 | indexKallisto(fastaFiles, fastaPath, fastaTxDbLite = TRUE,
collapse = "_mergedWith_", kmer = 31, makeUnique = TRUE)
|
Arguments
fastaFiles |
a character string or vector of FASTA transcriptomes |
fastaPath |
where to find the preceding FASTA files |
fastaTxDbLite |
boolean: should we try to annotate new FASTAs? (yes) |
collapse |
string to name multi-FASTA indices ("_mergedWith_") |
kmer |
integer, integer 3-31 of kmer size,default 31 |
makeUnique |
boolean, true will auto-correct existing dupes flexible |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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