BAM_file_position_pair_frequencies.error: Extract the position pair frequencies from read table...
In SLeviyang/RegressHaplo: Haplotype Reconstruction Using Penalized Regression
BAM_file_position_pair_frequencies.error R Documentation
Extract the position pair frequencies from read table generated from BAM file
Description
Extract the position pair frequencies from read table generated from BAM file
Usage
BAM_file_position_pair_frequencies.error(out_dir, pair_df)
Arguments
out_dir
directory in which to find 'pair_comparison_read_table.csv'
pair_df
data.frame produced by position_pairs.error giving
position pairs to consider
Value
a data.frame with columns pos1, pos2, nuc1, nuc2, nuc, freq
where nuc1, nuc2 are the nucleotides at pos1 and pos2, nuc is nuc1+nuc2,
and freq is the frequency
SLeviyang/RegressHaplo documentation built on June 1, 2022, 10:48 p.m.
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| BAM_file_position_pair_frequencies.error | R Documentation |
Extract the position pair frequencies from read table generated from BAM file
Description
Extract the position pair frequencies from read table generated from BAM file
Usage
BAM_file_position_pair_frequencies.error(out_dir, pair_df)
Arguments
out_dir |
directory in which to find 'pair_comparison_read_table.csv' |
pair_df |
data.frame produced by position_pairs.error giving position pairs to consider |
Value
a data.frame with columns pos1, pos2, nuc1, nuc2, nuc, freq where nuc1, nuc2 are the nucleotides at pos1 and pos2, nuc is nuc1+nuc2, and freq is the frequency
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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