create_position_pair_comparison_read_table.error: Create a read table for analyzing frequencies of positions...

In SLeviyang/RegressHaplo: Haplotype Reconstruction Using Penalized Regression

Create a read table for analyzing frequencies of positions pairs. This is a pre-analysis step.

Description

Create a read table for analyzing frequencies of positions pairs. This is a pre-analysis step.

Usage

create_position_pair_comparison_read_table.error(
  bam_file,
  variable_calls,
  out_dir
)

Arguments

bam_file	path to BAM file
out_dir	directory in which to write the output read table as 'position_pair_read_table.csv'
variant_calls	a variant call object as outputed by variant_calls()

Value

path to created file

SLeviyang/RegressHaplo documentation built on June 1, 2022, 10:48 p.m.