parameters_to_solutions.pipeline: Given a parameter files, run RegressHaplo to produce multiple...

In SLeviyang/RegressHaplo: Haplotype Reconstruction Using Penalized Regression

Given a parameter files, run RegressHaplo to produce multiple solutions

Description

Given a parameter files, run RegressHaplo to produce multiple solutions

Usage

parameters_to_solutions.pipeline(
  out_dir,
  num_trials = 700,
  rho_vals = c(0.1, 1, 5, 10, 20)
)

Arguments

out_dir	output directory for parameter files and assumed directory of parameter files
num_trials	number of starting points to try in attempting to find a global min for each rho values
rho_values	rho values to use in finding global min.

Details

The parameter files assumed to exist are y.csv, P.csv, h.csv

Value

path to haplotype file

SLeviyang/RegressHaplo documentation built on June 1, 2022, 10:48 p.m.