clean.read_table: Clean read table

In SLeviyang/RegressHaplo: Haplotype Reconstruction Using Penalized Regression

Clean read table

Description

Clean read table

Usage

clean.read_table(
  df,
  min_count = 10,
  remove_outside_reads = T,
  remove_empty_cols = T,
  remove_non_variant_pos = F,
  remove_deletions = F,
  remove_partial_cover_reads = F
)

Arguments

df	read table
min_count	remove rows with count below
remove_outside_reads	remove rows with all NA
remove_empty_cols	remove cols with all NA
remove_non_variant_pos	remove cols with only 1 value other than NA
remove_deletions	replace "-" with NA
remove_partial_cover_reads	remove rows with one or more NA

SLeviyang/RegressHaplo documentation built on June 1, 2022, 10:48 p.m.