calculate_position_pair_error.error: Calculate error for each position pair
In SLeviyang/RegressHaplo: Haplotype Reconstruction Using Penalized Regression
calculate_position_pair_error.error R Documentation
Calculate error for each position pair
Description
Calculate error for each position pair
Usage
calculate_position_pair_error.error(df1, df2)
Arguments
df1
A data.frame containing pos1, pos2, nuc1, nuc2, nuc (pasted nuc1,nuc2),
freq (produced by BAM_file_position_pair_frequencies.error or
reconstructed_position_pair_frequencies.error)
Value
a data.frame containing pos1, pos2, error where error is sum of absolute
frequency differences at each position over true/predicted nucleotide pairs.
SLeviyang/RegressHaplo documentation built on June 1, 2022, 10:48 p.m.
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| calculate_position_pair_error.error | R Documentation |
Calculate error for each position pair
Description
Calculate error for each position pair
Usage
calculate_position_pair_error.error(df1, df2)
Arguments
df1 |
A data.frame containing pos1, pos2, nuc1, nuc2, nuc (pasted nuc1,nuc2), freq (produced by BAM_file_position_pair_frequencies.error or reconstructed_position_pair_frequencies.error) |
Value
a data.frame containing pos1, pos2, error where error is sum of absolute frequency differences at each position over true/predicted nucleotide pairs.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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