haplotype_match.readFit: Determine haplotypes that match a nucleotide pattern

View source: R/readFit.R

haplotype_match.readFitR Documentation

Determine haplotypes that match a nucleotide pattern

Description

Given a nucleotide pattern covering some portion of read table positions, return a vector of 1's and 0's representing haplotypes that match the patterh

Usage

haplotype_match.readFit(nucs, h)

Arguments

nucs

A character vector equal to the number of positions in the read table. Positions at which nuceotides are not specified have value "+".

df

read table

haplotype

matrix

Value

A numeric vector of 1's and 0's


SLeviyang/RegressHaplo documentation built on June 1, 2022, 10:48 p.m.