haplotypes_to_fasta.pipeline: Given RegressHaplo haplotypes file, produce fasta file...
In SLeviyang/RegressHaplo: Haplotype Reconstruction Using Penalized Regression
haplotypes_to_fasta.pipeline R Documentation
Given RegressHaplo haplotypes file, produce fasta file showing
haplotypes over the full reference with frequencies as part of
sequence names
Description
Given RegressHaplo haplotypes file, produce fasta file showing
haplotypes over the full reference with frequencies as part of
sequence names
Usage
haplotypes_to_fasta.pipeline(bam_file, out_dir)
Arguments
bam_file
bam file containing reads for haplotype reconstruction
out_dir
output directory for haplotype file and assumed
directory of solutions file
Value
path to fasta file
SLeviyang/RegressHaplo documentation built on June 1, 2022, 10:48 p.m.
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| haplotypes_to_fasta.pipeline | R Documentation |
Given RegressHaplo haplotypes file, produce fasta file showing haplotypes over the full reference with frequencies as part of sequence names
Description
Given RegressHaplo haplotypes file, produce fasta file showing haplotypes over the full reference with frequencies as part of sequence names
Usage
haplotypes_to_fasta.pipeline(bam_file, out_dir)
Arguments
bam_file |
bam file containing reads for haplotype reconstruction |
out_dir |
output directory for haplotype file and assumed directory of solutions file |
Value
path to fasta file
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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