haplotypes_to_fasta.pipeline: Given RegressHaplo haplotypes file, produce fasta file...

haplotypes_to_fasta.pipelineR Documentation

Given RegressHaplo haplotypes file, produce fasta file showing haplotypes over the full reference with frequencies as part of sequence names

Description

Given RegressHaplo haplotypes file, produce fasta file showing haplotypes over the full reference with frequencies as part of sequence names

Usage

haplotypes_to_fasta.pipeline(bam_file, out_dir)

Arguments

bam_file

bam file containing reads for haplotype reconstruction

out_dir

output directory for haplotype file and assumed directory of solutions file

Value

path to fasta file


SLeviyang/RegressHaplo documentation built on June 1, 2022, 10:48 p.m.