API for SamBuckberry/RunATAC
Functions for Importing, Processing, Analyzing, Plotting and Reformatting ATAC-seq Data
| Global functions | |
|---|---|
| bam_to_centres_bw | Man page Source code |
| bam_to_insertions_bw | Man page Source code |
| calc_dinuc_freq | Man page Source code |
| calc_frip | Man page Source code |
| calc_ins_bias | Man page Source code |
| calc_ins_pwm | Man page Source code |
| calc_motif_dist | Man page Source code |
| calc_profile_bias | Source code |
| calc_v | Man page Source code |
| motif_gr | Man page Source code |
| plot_insert_size | Man page Source code |
| plot_scaled_footprint | Man page Source code |
| plot_v | Man page Source code |
| range_summary | Man page Source code |
| read_atac_frags | Man page Source code |
| read_atac_insertions | Man page Source code |
| read_bed | Man page Source code |
| write_gr_bed | Man page Source code |
| write_insertions_bw | Man page Source code |
| write_nuc_bw | Man page Source code |
| write_offset_bed | Source code |
