calc_dinuc_freq: Calculate the dinucleotide insertion frequency for Tn5...
In SamBuckberry/RunATAC: Functions for Importing, Processing, Analyzing, Plotting and Reformatting ATAC-seq Data
Description
Usage
Arguments
Value
View source: R/calc_dinuc_freq.R
Description
Calculate the dinucleotide insertion frequency for Tn5 insertions.
Usage
1
calc_dinuc_freq(ins_gr, genome)
Arguments
ins_gr
A GRanges object.
Typically of ATAC-seq Tn5 insertions generated with the function read_atac_insertions.
genome
A BSgenome object.
Value
A data.frame containing dinucleotide counts and precentages.
SamBuckberry/RunATAC documentation built on Aug. 2, 2021, 9:54 a.m.
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Description Usage Arguments Value
View source: R/calc_dinuc_freq.R
Description
Calculate the dinucleotide insertion frequency for Tn5 insertions.
Usage
1 | calc_dinuc_freq(ins_gr, genome)
|
Arguments
ins_gr |
A GRanges object. Typically of ATAC-seq Tn5 insertions generated with the function read_atac_insertions. |
genome |
A BSgenome object. |
Value
A data.frame containing dinucleotide counts and precentages.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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