calc_motif_dist: Calculate distances of Tn5 insertions from motif.

In SamBuckberry/RunATAC: Functions for Importing, Processing, Analyzing, Plotting and Reformatting ATAC-seq Data

Description

Calculate distances of Tn5 insertions from motif.

Usage

calc_motif_dist(signal_gr, motif_pos_gr, range = 200)

Arguments

signal_gr	A GRanges object with tn5 insertions. See the read_atac_bam_tn function.
motif_pos_gr	A GRanges object with the positions of the PWM in ATAC-seq peaks.
range	The distance in bases flanking the the motif to calculate signal.

Value

A numeric vector of distances of Tn5 insertion sites to motif centre.

SamBuckberry/RunATAC documentation built on Aug. 2, 2021, 9:54 a.m.