write_insertions_bw: Write a bigwig file of Tn5 insertion depth
In SamBuckberry/RunATAC: Functions for Importing, Processing, Analyzing, Plotting and Reformatting ATAC-seq Data
View source: R/write_functions.R
Description
Write a bigwig file of Tn5 insertion depth
Usage
1
write_insertions_bw(gr, file, scale_cpm = FALSE)
Arguments
gr
A GRanges object containing nucleosome positions.
file
Path for output bigwig file. Extension should be .bw or .bigwig.
scale_cpm
Logical. Should the output be scaled to number of
nucleosome spanning reads.
SamBuckberry/RunATAC documentation built on Aug. 2, 2021, 9:54 a.m.
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View source: R/write_functions.R
Description
Write a bigwig file of Tn5 insertion depth
Usage
1 | write_insertions_bw(gr, file, scale_cpm = FALSE)
|
Arguments
gr |
A GRanges object containing nucleosome positions. |
file |
Path for output bigwig file. Extension should be .bw or .bigwig. |
scale_cpm |
Logical. Should the output be scaled to number of nucleosome spanning reads. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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