calc_frip: Calculate the fraction of reads in peaks.
In SamBuckberry/RunATAC: Functions for Importing, Processing, Analyzing, Plotting and Reformatting ATAC-seq Data
Description
Usage
Arguments
Value
Description
Calculate the fraction of reads in peaks.
Usage
1
calc_frip(signal, peaks)
Arguments
signal
A GRanges object. Typically of ATAC-seq Tn5 insertions.
peaks
A GRanges object. Typically of ATAC-seq peaks.
Value
Fraction of ranges in signal overlapping peaks. Numeric.
SamBuckberry/RunATAC documentation built on Aug. 2, 2021, 9:54 a.m.
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Description Usage Arguments Value
Description
Calculate the fraction of reads in peaks.
Usage
1 | calc_frip(signal, peaks)
|
Arguments
signal |
A GRanges object. Typically of ATAC-seq Tn5 insertions. |
peaks |
A GRanges object. Typically of ATAC-seq peaks. |
Value
Fraction of ranges in signal overlapping peaks. Numeric.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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