write_nuc_bw: Write bigwig file of nucleosome depth

In SamBuckberry/RunATAC: Functions for Importing, Processing, Analyzing, Plotting and Reformatting ATAC-seq Data

Description

Write bigwig file of nucleosome depth

Usage

write_nuc_bw(gr, file, scale_cpm = FALSE, nuc_span_size = c(180, 247))

Arguments

gr	A GRanges object containing nucleosome positions.
file	Path for output bigwig file. Extension should be .bw or .bigwig.
scale_cpm	Logical. Should the output be scaled to number of nucleosome spanning reads.
nuc_span_size	Numeric of length 2 specifying the insert size of nucleosome spanning fragnemts.

SamBuckberry/RunATAC documentation built on Aug. 2, 2021, 9:54 a.m.