read_atac_insertions: Read BAM file Tn5 insertion positions into GRanges object
In SamBuckberry/RunATAC: Functions for Importing, Processing, Analyzing, Plotting and Reformatting ATAC-seq Data
Description
Usage
Arguments
Value
View source: R/read_atac_insertions.R
Description
Read BAM file Tn5 insertion positions into GRanges object
Usage
1
read_atac_insertions(bam_file, yieldSize = 1e+06, ...)
Arguments
bam_file
Path to a BAM formatted file.
yieldSize
The number of records from the BAM file to read in each chunk. See ?BamFile.
...
Arguments passed to ScanBamParam.
Value
A GRanges object of Tn5 insertion positions
SamBuckberry/RunATAC documentation built on Aug. 2, 2021, 9:54 a.m.
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Description Usage Arguments Value
View source: R/read_atac_insertions.R
Description
Read BAM file Tn5 insertion positions into GRanges object
Usage
1 | read_atac_insertions(bam_file, yieldSize = 1e+06, ...)
|
Arguments
bam_file |
Path to a BAM formatted file. |
yieldSize |
The number of records from the BAM file to read in each chunk. See ?BamFile. |
... |
Arguments passed to ScanBamParam. |
Value
A GRanges object of Tn5 insertion positions
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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