plot_scaled_footprint: Plot scaled ATAC-seq footprint signal.

In SamBuckberry/RunATAC: Functions for Importing, Processing, Analyzing, Plotting and Reformatting ATAC-seq Data

Description

Plot scaled ATAC-seq footprint signal.

Usage

plot_scaled_footprint(tn_dist, window = 200, scale_to_lib = FALSE,
  libsize = 1, xlab = "", ylab = "", ...)

Arguments

tn_dist	A vector of distances of tn5 insertions relative to motif centre. See atac_motif_dist function.
window	The plotting window in bases.
scale_to_lib	Should plot be scaled to library size?. Logical.
libsize	The ATAC-seq library size for normalising signal to tn5 intergration events per million.
xlab	Character. X axis label.
ylab	Character. Y axis label.
...	Optional arguments passed to plot function.

Value

An ATAC-seq footprint plot in the current graphics device. No values are returned.

SamBuckberry/RunATAC documentation built on Aug. 2, 2021, 9:54 a.m.