motif_gr: Get the positions of the PWM in ATAC-seq peaks.
In SamBuckberry/RunATAC: Functions for Importing, Processing, Analyzing, Plotting and Reformatting ATAC-seq Data
Description
Usage
Arguments
Value
Description
Get the positions of the PWM in ATAC-seq peaks.
Usage
1
motif_gr(gr, pwm, genome, min.score = "80%")
Arguments
gr
A GRanges object. Usually ranges of ATAC-seq peaks.
pwm
A positional weight matrix of class Matirx.
genome
A BSgenome object.
min.score
Minimum alignment score for pwm.
Value
A GRanges object with positions of PWM match in peaks.
SamBuckberry/RunATAC documentation built on Aug. 2, 2021, 9:54 a.m.
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Description Usage Arguments Value
Description
Get the positions of the PWM in ATAC-seq peaks.
Usage
1 | motif_gr(gr, pwm, genome, min.score = "80%")
|
Arguments
gr |
A GRanges object. Usually ranges of ATAC-seq peaks. |
pwm |
A positional weight matrix of class Matirx. |
genome |
A BSgenome object. |
min.score |
Minimum alignment score for pwm. |
Value
A GRanges object with positions of PWM match in peaks.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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