calc_ins_bias: Calculate the PWM for Tn5 insertions.
In SamBuckberry/RunATAC: Functions for Importing, Processing, Analyzing, Plotting and Reformatting ATAC-seq Data
Description
Usage
Arguments
Value
View source: R/calc_ins_bias.R
Description
Calculate the PWM for Tn5 insertions.
Usage
1
calc_ins_bias(ins_pwm, regions_gr, genome)
Arguments
ins_pwm
A positional weight matrix generated with the function calc_ins_pwm.
Must be a matrix of 21 columns and 4 rows.
regions_gr
A GRanges object of regions to calculate insertion bias scores.
genome
A BSgenome object.
site for calculating the PWM.
Value
A vector of per-base bias scores for each range in regions_gr.
SamBuckberry/RunATAC documentation built on Aug. 2, 2021, 9:54 a.m.
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Description Usage Arguments Value
View source: R/calc_ins_bias.R
Description
Calculate the PWM for Tn5 insertions.
Usage
1 | calc_ins_bias(ins_pwm, regions_gr, genome)
|
Arguments
ins_pwm |
A positional weight matrix generated with the function calc_ins_pwm. Must be a matrix of 21 columns and 4 rows. |
regions_gr |
A GRanges object of regions to calculate insertion bias scores. |
genome |
A BSgenome object. site for calculating the PWM. |
Value
A vector of per-base bias scores for each range in regions_gr.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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