RNAduplex: Estimates the duplex structure of a sequence (oligo) pairing...
In Santaris/seqtools: Tools for oligonucleotide-centric sequence analysis
Description
Usage
Arguments
Value
See Also
Description
This function is a wrapper for RNAduplex from the ViennaRNA package. It
performs thermodynamic duplex folding of the input estimates the minimum free
energy (mfe) structure. The ViennaRNA package needs to be installed on the
system and present on the PATH
Usage
1
Arguments
seqs
a character vector or DNAStringSet object with the sequences to
fold
Value
a data frame with columns duplex_structure (dot-bracket format),
duplex_pos and duplex_energy (kcal/mol)
See Also
Santaris/seqtools documentation built on May 9, 2019, 12:44 p.m.
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Description Usage Arguments Value See Also
Description
This function is a wrapper for RNAduplex from the ViennaRNA package. It performs thermodynamic duplex folding of the input estimates the minimum free energy (mfe) structure. The ViennaRNA package needs to be installed on the system and present on the PATH
Usage
1 |
Arguments
seqs |
a character vector or DNAStringSet object with the sequences to fold |
Value
a data frame with columns duplex_structure (dot-bracket format), duplex_pos and duplex_energy (kcal/mol)
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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