seqmod2uplow.strict: Filter LNA-oligos and construct the upper-/lower case...
In Santaris/seqtools: Tools for oligonucleotide-centric sequence analysis
Description
Usage
Arguments
See Also
Examples
Description
This function filters LNA-oligos based on sequence, sugar modification and backbone and returns
the upper-/lower case representation. Only oligos suitable for the oligo-predictors are accepted.
All nucleobases other than A, C, G, T, U and E, sugar modifications other than L and D and backbones other
than S (phosphorothioate) are excluded and result in NA.
Usage
1
seqmod2uplow.strict(line.in)
Arguments
line.in
a character vector of length 3 where the first element is the sequence
(e.g. ACGTGTTT), the second element the modification (e.g. LLLDDDLL) and the third
is the backbone (e.g. SSSSSSSS).
See Also
Examples
1
seqmod2uplow.strict(c("ACGTGTTT","LLLDDDLL","SSSSSSSS"))
Santaris/seqtools documentation built on May 9, 2019, 12:44 p.m.
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Description Usage Arguments See Also Examples
Description
This function filters LNA-oligos based on sequence, sugar modification and backbone and returns the upper-/lower case representation. Only oligos suitable for the oligo-predictors are accepted. All nucleobases other than A, C, G, T, U and E, sugar modifications other than L and D and backbones other than S (phosphorothioate) are excluded and result in NA.
Usage
1 | seqmod2uplow.strict(line.in)
|
Arguments
line.in |
a character vector of length 3 where the first element is the sequence (e.g. ACGTGTTT), the second element the modification (e.g. LLLDDDLL) and the third is the backbone (e.g. SSSSSSSS). |
See Also
Examples
1 | seqmod2uplow.strict(c("ACGTGTTT","LLLDDDLL","SSSSSSSS"))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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