seqmod2pythia: Construct the sequence representation of LNA-oligos used in...
In Santaris/seqtools: Tools for oligonucleotide-centric sequence analysis
Description
Usage
Arguments
See Also
Examples
Description
This function merges sequence, modification, and backbone for a LNA-oligo
into the representation used in the Pythia database.
Usage
1
seqmod2pythia(line.in)
Arguments
line.in
a character vector of length 3 where the first element is the sequence
(e.g. ACGTGTTT) and the second element the modification (e.g. LLLDDDLL), and the
final element is the backbone ("SSOSSOSH"). Notice all elements have same length.
The backbone elements are between nucleotides and always have H in the end.
See Also
Examples
1
a <- seqmod2pythia( c("acgtacgtee", "LLDDLDLDDD", "SSOSSOOSSH"))
Santaris/seqtools documentation built on May 9, 2019, 12:44 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments See Also Examples
Description
This function merges sequence, modification, and backbone for a LNA-oligo into the representation used in the Pythia database.
Usage
1 | seqmod2pythia(line.in)
|
Arguments
line.in |
a character vector of length 3 where the first element is the sequence (e.g. ACGTGTTT) and the second element the modification (e.g. LLLDDDLL), and the final element is the backbone ("SSOSSOSH"). Notice all elements have same length. The backbone elements are between nucleotides and always have H in the end. |
See Also
Examples
1 | a <- seqmod2pythia( c("acgtacgtee", "LLDDLDLDDD", "SSOSSOOSSH"))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.