find.best.matches: Find best matches for a pattern among a set of sequences
In Santaris/seqtools: Tools for oligonucleotide-centric sequence analysis
Description
This function is a convenience wrapper for vmatchpattern.
It is slow but returns a lot of information.
Usage
1
2
find.best.matches(pattern, seq.stringset, max.mismatch = 2,
ret.match = T)
Arguments
pattern
a vector of patterns to look in seq.stringset for.
seq.stringset
a biostrings stringSet object.
max.mismatch
the maximum number of mismatches allowed in seq.stringset matches to pattern.
Santaris/seqtools documentation built on May 9, 2019, 12:44 p.m.
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Description
This function is a convenience wrapper for vmatchpattern.
It is slow but returns a lot of information.
Usage
1 2 | find.best.matches(pattern, seq.stringset, max.mismatch = 2,
ret.match = T)
|
Arguments
pattern |
a vector of patterns to look in seq.stringset for. |
seq.stringset |
a biostrings stringSet object. |
max.mismatch |
the maximum number of mismatches allowed in seq.stringset matches to pattern. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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