find.best.matches: Find best matches for a pattern among a set of sequences

Description Usage Arguments

Description

This function is a convenience wrapper for vmatchpattern. It is slow but returns a lot of information.

Usage

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find.best.matches(pattern, seq.stringset, max.mismatch = 2,
  ret.match = T)

Arguments

pattern

a vector of patterns to look in seq.stringset for.

seq.stringset

a biostrings stringSet object.

max.mismatch

the maximum number of mismatches allowed in seq.stringset matches to pattern.


Santaris/seqtools documentation built on May 9, 2019, 12:44 p.m.