count.singlepatt.multiseq: Count (mis)matches for a single pattern among a set of...
In Santaris/seqtools: Tools for oligonucleotide-centric sequence analysis
Description
This function is a convenience wrapper for vcountPattern.
It is fast but returns only counts.
Usage
1
count.singlepatt.multiseq(pattern, seq.stringset, max.mismatch = 2)
Arguments
pattern
a pattern to look in seq.stringset for.
seq.stringset
a biostrings stringSet object.
max.mismatch
the maximum number of mismatches allowed in seq.stringset matches to pattern.
Santaris/seqtools documentation built on May 9, 2019, 12:44 p.m.
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Description
This function is a convenience wrapper for vcountPattern.
It is fast but returns only counts.
Usage
1 | count.singlepatt.multiseq(pattern, seq.stringset, max.mismatch = 2)
|
Arguments
pattern |
a pattern to look in seq.stringset for. |
seq.stringset |
a biostrings stringSet object. |
max.mismatch |
the maximum number of mismatches allowed in seq.stringset matches to pattern. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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