RNAfold: Folds a vector of sequences using a system call to Vienna...
In Santaris/seqtools: Tools for oligonucleotide-centric sequence analysis
Description
Usage
Arguments
Value
See Also
Description
This function is a wrapper for RNAfold from the ViennaRNA package. It performs thermodynamic folding of the input and
estimates the minimum free energy (mfe) structure.
The ViennaRNA package needs to be installed on the system and present on the PATH
Usage
1
RNAfold(seqs)
Arguments
seqs
a character vector og DNAStringSet object with the sequences to fold
Value
a data frame with columns sec_structure (dot-bracket format) and mfe (kcal/mol)
See Also
Santaris/seqtools documentation built on May 9, 2019, 12:44 p.m.
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Description Usage Arguments Value See Also
Description
This function is a wrapper for RNAfold from the ViennaRNA package. It performs thermodynamic folding of the input and estimates the minimum free energy (mfe) structure. The ViennaRNA package needs to be installed on the system and present on the PATH
Usage
1 | RNAfold(seqs)
|
Arguments
seqs |
a character vector og DNAStringSet object with the sequences to fold |
Value
a data frame with columns sec_structure (dot-bracket format) and mfe (kcal/mol)
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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