count.multipatt.singleseq: Count (mis)matches for multiple patterns in a single sequence
In Santaris/seqtools: Tools for oligonucleotide-centric sequence analysis
Description
This function is a convenience wrapper for matchPDict.
It is fast (do parallel computation) but returns only counts.
Usage
1
2
count.multipatt.singleseq(patterns, seq.in, max.mismatch = 2,
parallel = T)
Arguments
patterns
a vector of patterns to look in seq.in for.
seq.in
a biostrings string object.
max.mismatch
the maximum number of mismatches allowed in seq.stringset matches to pattern.
parallel
either True (default) or False, should counting be parallelized?
Santaris/seqtools documentation built on May 9, 2019, 12:44 p.m.
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Description
This function is a convenience wrapper for matchPDict.
It is fast (do parallel computation) but returns only counts.
Usage
1 2 | count.multipatt.singleseq(patterns, seq.in, max.mismatch = 2,
parallel = T)
|
Arguments
patterns |
a vector of patterns to look in seq.in for. |
seq.in |
a biostrings string object. |
max.mismatch |
the maximum number of mismatches allowed in seq.stringset matches to pattern. |
parallel |
either True (default) or False, should counting be parallelized? |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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