AddPies: AddPies

In SofieVG/FlowSOM: Using self-organizing maps for visualization and interpretation of cytometry data

AddPies

Description

Function plots the pies

Usage

AddPies(p, fsom, cellLabels, layout = NULL, colorPalette = NULL)

Arguments

p	ggplot object
fsom	FlowSOM object, as generated by BuildMST
cellLabels	Array of factors indicating the cell labels
layout	Coordinates of nodes. Uses dataframe of the ggplot object if NULL.
colorPalette	Color palette to be used for colors. Can be either a function or an array specifying colors.

Value

ggplot object with the pies added

See Also

PlotFlowSOM, AddLabels, AddNodes, AddBackground, PlotPies, AddStars, ParseArcs

SofieVG/FlowSOM documentation built on Feb. 1, 2024, 11:33 a.m.