GetClusters: Get cluster label for all individual cells
In SofieVG/FlowSOM: Using self-organizing maps for visualization and interpretation of cytometry data
GetClusters R Documentation
Get cluster label for all individual cells
Description
Get cluster label for all individual cells
Usage
GetClusters(fsom)
Arguments
fsom
FlowSOM object as generated by the FlowSOM function
or the BuildSOM function
Value
vector label for every cell
Examples
fileName <- system.file("extdata", "68983.fcs", package = "FlowSOM")
flowSOM.res <- FlowSOM(fileName, compensate = TRUE, transform = TRUE,
scale = TRUE, colsToUse = c(9, 12, 14:18), nClus = 10)
cluster_labels <- GetClusters(flowSOM.res)
SofieVG/FlowSOM documentation built on Feb. 1, 2024, 11:33 a.m.
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| GetClusters | R Documentation |
Get cluster label for all individual cells
Description
Get cluster label for all individual cells
Usage
GetClusters(fsom)
Arguments
fsom |
FlowSOM object as generated by the FlowSOM function or the BuildSOM function |
Value
vector label for every cell
Examples
fileName <- system.file("extdata", "68983.fcs", package = "FlowSOM")
flowSOM.res <- FlowSOM(fileName, compensate = TRUE, transform = TRUE,
scale = TRUE, colsToUse = c(9, 12, 14:18), nClus = 10)
cluster_labels <- GetClusters(flowSOM.res)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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