MetaclusterMFIs: MetaclusterMFIs

In SofieVG/FlowSOM: Using self-organizing maps for visualization and interpretation of cytometry data

MetaclusterMFIs

Description

Compute the median fluorescence intensities for the metaclusters

Usage

MetaclusterMFIs(fsom)

Arguments

fsom	Result of calling the FlowSOM function

Value

Metacluster MFIs

Examples

fileName <- system.file("extdata", "68983.fcs", package="FlowSOM")
ff <- flowCore::read.FCS(fileName)
ff <- flowCore::compensate(ff,ff@description$SPILL)
ff <- flowCore::transform(ff,
         flowCore::transformList(colnames(ff@description$SPILL),
                                flowCore::logicleTransform()))
flowSOM.res <- FlowSOM(ff,scale=TRUE,colsToUse=c(9,12,14:18),maxMeta=10)
mfis <- GetMetaclusterMFIs(flowSOM.res)

SofieVG/FlowSOM documentation built on Feb. 1, 2024, 11:33 a.m.