Files in SofieVG/FlowSOM
Using self-organizing maps for visualization and interpretation of cytometry data

.Rbuildignore
.gitignore
DESCRIPTION
FlowSOM_Cheatsheet.pdf
NAMESPACE
R/0_FlowSOM.R R/1_readInput.R R/2_buildSOM.R R/3_buildMST.R R/4_metaClustering.R R/5_plotFunctions.R R/6_deprecated.R R/utils-pipe.R R/zzz.R README.md
inst/CITATION
inst/NEWS
inst/extdata/68983.fcs
inst/extdata/gating.wsp
inst/extdata/gatingResult.csv
inst/extdata/manualGating.xml
man/.DS_Store
man/AddAnnotation.Rd man/AddBackground.Rd man/AddFlowFrame.Rd man/AddLabels.Rd man/AddMST.Rd man/AddNodes.Rd man/AddPies.Rd man/AddScale.Rd man/AddStars.Rd man/AddStarsPies.Rd man/AggregateFlowFrames.Rd man/AutoMaxNodeSize.Rd man/BuildMST.Rd man/BuildSOM.Rd man/CountGroups.Rd man/Dist.MST.Rd man/FMeasure.Rd man/FlowSOM.Rd man/FlowSOMSubset.Rd man/FlowSOM_colors.Rd man/FlowSOMmary.Rd man/GetCVs.Rd man/GetChannels.Rd man/GetClusterCVs.Rd man/GetClusterMFIs.Rd man/GetClusterPercentagesPositive.Rd man/GetClusters.Rd man/GetCounts.Rd man/GetFeatures.Rd man/GetFlowJoLabels.Rd man/GetMFIs.Rd man/GetMarkers.Rd man/GetMetaclusterCVs.Rd man/GetMetaclusterMFIs.Rd man/GetMetaclusterPercentagesPositive.Rd man/GetMetaclusters.Rd man/GetPercentages.Rd man/GroupStats.Rd man/Initialize_KWSP.Rd man/Initialize_PCA.Rd man/ManualVector.Rd man/MapDataToCodes.Rd man/MetaClustering.Rd man/MetaclusterCVs.Rd man/MetaclusterMFIs.Rd man/NClusters.Rd man/NMetaclusters.Rd man/NewData.Rd man/ParseArcs.Rd man/ParseEdges.Rd man/ParseLayout.Rd man/ParseNodeSize.Rd man/ParseQuery.Rd man/ParseSD.Rd man/Plot2DScatters.Rd man/PlotCenters.Rd man/PlotClusters2D.Rd man/PlotDimRed.Rd man/PlotFileScatters.Rd man/PlotFlowSOM.Rd man/PlotGroups.Rd man/PlotLabels.Rd man/PlotManualBars.Rd man/PlotMarker.Rd man/PlotNode.Rd man/PlotNumbers.Rd man/PlotOutliers.Rd man/PlotOverview2D.Rd man/PlotPies.Rd man/PlotSD.Rd man/PlotStarLegend.Rd man/PlotStars.Rd man/PlotVariable.Rd man/Purity.Rd man/QueryMultiple.Rd man/QueryStarPlot.Rd man/ReadInput.Rd man/SOM.Rd man/SaveClustersToFCS.Rd man/ScaleStarHeights.Rd man/TestOutliers.Rd man/UpdateFlowSOM.Rd man/UpdateMetaclusters.Rd man/UpdateNodeSize.Rd man/get_channels.Rd man/get_markers.Rd man/gg_color_hue.Rd man/metaClustering_consensus.Rd man/pipe.Rd man/print.FlowSOM.Rd man/query_multiple.Rd
src/som.c
vignettes/FlowSOM.Rnw
SofieVG/FlowSOM documentation built on Feb. 1, 2024, 11:33 a.m.