ManualVector: Summarize the gating matrix into one vector, only including...

View source: R/0_FlowSOM.R

ManualVectorR Documentation

Summarize the gating matrix into one vector, only including the cell types of interest

Description

Extract the compensated and transformed data and all gate labels.

Usage

ManualVector(manualMatrix, cellTypes)

Arguments

manualMatrix

Matrix containing boolean values, indicating for every gate (column) whether the cell (row) is part of it or not.

cellTypes

Cell types to use in the summary vector. All others will be ignored and cells which do not fall in one of these gates will get the label "Unknown". Order is important!

Value

A factor with one label for every cell


SofieVG/FlowSOM documentation built on Feb. 1, 2024, 11:33 a.m.